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Custom port for PostgreSQL (that differs from default 5432) can be specified on "Step 1 of 6. Connect to PostgreSQL server" page of the conversion wizard. This option is only available for "Remote" connection mode. If you are connecting to local PostgreSQL server, it still can be used by specifying "127.0.0.1" or "localhost" in "Host" edit box.
Custom port for SQL Server (other than 1433) can be specified in "MS SQL Server" field of "Step 2 of 6. Connect to Microsoft SQL server" page as follows:
Sql_server_name,1234
where 1234 is the custom port.
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