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OraDump to MySQL converter merges Oracle schema with table names to preserve the same table references as it appears in the source database (for example 'SYSTEM.EXPORT_JOB'). To avoid this merging, unselect checkbox "Merge schema and table names"on "Step 3 of 5" page. In the command line version this option do not use "--ora_schema" parameter.
Note, this option makes sense for the first time conversion of the dump file. If the same dump file has been converted before and has the related cache file (.odc), all table names are loaded from that cache file. See Cache Files article for more information.
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